NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10880

Scaffold Ga0104988_10880


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10880 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)35740
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (83.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010315Metagenome305Y
F012570Metagenome279Y
F044373Metagenome / Metatranscriptome154Y
F093536Metagenome106Y
F095133Metagenome105Y
F097262Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1088011F097262AGGCGGMKCMTCNERTYVVNVIKMAGGLRRQRKCKSCGAGAYSAEVWLKATANGAEPVYTKEEAALIKKKAVNARRANEDRRKKDAS*
Ga0104988_1088012F044373AGGAGMLRDGYFIKEEPPKIGAHYTPQFYQKPATPEERFVQDVMLGIMPYKESSLTKLLGRLLRI
Ga0104988_1088048F093536GGAGMKVKSDNFTSMKGHVADGCIVVAPSGKEFTLKNTLKGWILNGPDGLPCSGNLPSAFDVEYFVVNGLQTH*
Ga0104988_1088049F010315GGAGMTNIFEQFQGADLDRLAECIKAVKAAGLTIDKYTQAGVNQNSGNVWIWGECWAGCVYYSIGFDVQWSYSCPECGEEHDFDTYQALENYASEYDYDRCETCAPETVETETKGD*
Ga0104988_1088050F012570AGGGGGMQTLHIDGTTYRVKFDRDPLELAKAARKPWKPKKPKDIRTFPTWTPAVSTADYIRRFDNLNCLQSVDYFGASAETAAQYDPSIPLFEVCE*
Ga0104988_1088052F095133AGAAGGMNNARDDARAVAGAKNRPYPHYLERVELLLDDVMFRLWVDFEPADRAVGVNATAWIVHAHVGDSPADIADYLNDATINRLEAEAADYLSGGD*
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