NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10891

Scaffold Ga0104988_10891


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10891 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)36505
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (63.49%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F001459Metagenome / Metatranscriptome690Y
F004760Metagenome / Metatranscriptome424N
F008071Metagenome339Y
F010603Metagenome / Metatranscriptome301Y
F025458Metagenome / Metatranscriptome201Y
F033721Metagenome / Metatranscriptome176Y
F035221Metagenome / Metatranscriptome172N
F039992Metagenome / Metatranscriptome162N
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F065530Metagenome / Metatranscriptome127Y
F091592Metagenome107N
F096882Metagenome / Metatranscriptome104N
F098923Metagenome103N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1089110F039992GGAGGVSLDEVSELKDRVASVSERLARMEERQVTLYHMVERSLSNFGDLSNRVNSIEGLKTKMLLVAGGLGAIISIAWDFVKSRLINGG*
Ga0104988_1089113F000635N/AMTLSEIAQFAGEKVGKTDSDTVTFLKKSASLNYRRVWDFAPWRESVTSSTYSVGTNRTVTLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLNLYPRLATAGTETLRVVEKLKCLTRNNYIVDFPPSTSALDDELRLPHVHQVVLALTHADALERERQYAKAQAVVQTANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA*
Ga0104988_1089115F008071GAGGMTAMEYVEASGVPETRWPNFREWFGWYEKNNLVGVVKDGGEVVGVAIARAVDASQDVAHYKHDYNAPDAFVDLTVTSIDGKLNARSLLAMKRLLSILWDELGPRRSLIFNRNGIRKQYDYMKFMRKAMA*
Ga0104988_1089121F035221N/AMVGFNTQTFYMKNILIAMAVLVAPVMAEDLDEFAGGVYNSGSAVFSGGRGVAITQNGLAVDSGILKLTPSGCYSSCGNVYYGNGEIVTKTGYLFYGSNGTKIQNGNYYSGTAGSTYLFESNKR*
Ga0104988_1089123F096882N/ALKESVRAWRTFEDALKNLDSFEACAKWVIDNPQICKKLSGMGLMAVMKEDLSIKKD*
Ga0104988_1089127F039994GGAMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL*
Ga0104988_1089128F033721AGGAMRWIKKEIDEDGKTGWAVYYDETGDGNQEEWKHRDTYETREDAVAACRIFEWEDYDCSDK
Ga0104988_108913F004760AGGAGMPVYQYEDTRNGKVIELEKAVAERDKVPRYLKRFQVPARLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRQNNG*
Ga0104988_1089130F039993N/AMKLAIAWICYRIGDFISITIMRYGYGYSLYNKLMLLSSDLDDKGVIWK*
Ga0104988_1089132F102824N/AMTPVRVQPENGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKTKAQDAADLWNAYAMWCQDRSGKRKRR*
Ga0104988_1089133F091592GGAMISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKKGLGNVN*
Ga0104988_1089134F057984GGAMRDNSIHDCVPGGLSILACKKGDNRKIKMDGLGHIKILAERKVQMYEIDVDVDEETRRKVCYAAWCEISKDDDALFNYGFNQALKRFIQTKGKKCTKKNLNKKRSRR*
Ga0104988_1089137F098923N/AMFCPIEITRKDIKALEEILKKEDVEPGRLMSDDMGYLTFIINQMLYDKFHGHGYKLDLVTGQFVKTKGE*
Ga0104988_108914F010603AGGAGMANEFVRSLRKAKGRALRFDAQGFTNVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0104988_1089158F065530N/AVIGAILNIIASILRLIPGWREKRIDKIEGEWRNNHQAIDDDLGPKPWWLRQYNDTVREDKRSRDGSDA*
Ga0104988_1089162F001459GGCGGMRKLKAALAFIRDQEWVEEPKWLEEDEKAWTAFLGTPTGKRLSLILLNLTLRQNASAIMKKPDGLAEACGRANGYRACVATLESLASTKLNSAIAGYGDGEDEPVAN*
Ga0104988_108918F025458N/AMGNKTLTHNLDGSSVFTDTRTIDEAHEENLTRIRELITAKIVEAGYDEVWQRNAALGVLTNLEVEQGREFIANLRTAYHDYKARLLASTRDEADGIQFNP*
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