Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10914 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10914 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	38466
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (87.72%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38466

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (87.72%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F026858	Metagenome / Metatranscriptome	196	Y
F028458	Metagenome	191	N
F041080	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1091429	F026858	AGG	MTHDNLLLDLTMREVEVIRMALRLQEDTHKRNDFPSLVLETQTLRSKIADAIIDNAKELTKA*
Ga0104988_1091432	F041080	GAGG	MNDTILHLAEELRVIADEISYNAIDTSSDYPKRGTIVKALPSQTRFKPKSVWVSLGNGTYKHLTGSKGLITTHERLNGYTEVVFEA*
Ga0104988_1091441	F001531	AGG	MNWQQIEPWEYVITSVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGDKDAKNLIYRSLRNHALDYCQKWKAKSVGYDVSDLYYYEADVVEALLPAVLRNEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAIKRLVNKLGGYRPFLDKDLPEPETEEPGEVVEGYDSSNHDEWHDEREDVND*
Ga0104988_1091442	F001515	N/A	MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNISKGYLITVDDLMSATRLYKKAKADELATN*
Ga0104988_1091444	F008808	GGA	MKNELNPCPECGQHFDNVFEATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRSITQDTYMTLFTAETQPDVILDVIEDMIVGSSMVGIDDELKQLLEDGE*
Ga0104988_1091457	F028458	AGCAGG	MAKINKGTLAIGWCDNGNTDGKFTEGVVSVALQCSNNGIQLTHSMRVQGNQIGRQRQVLFDYWADQIKSDWLLWIDSDIVVSMEVVAKLWDVADKINRPVVSGTYFISKETEGTLAKPYPALFFDVDEQTIQHVHPLPHNEVIKVDSAGFGFVLMHKSIIPKMREKFPDQSMFAELEHVGDKYVGEDIVFFRKMQEAGIPLHAHTGALVKHIKRFSLDVGYYDMYWTLDMIKQKAQEKQQQG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10914

Overview

Ecosystem & Geography

Associated Families

Sequences