Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10923 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10923 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	39203
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (74.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

39203

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (74.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F008296	Metagenome	335	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F029029	Metagenome / Metatranscriptome	189	Y
F056346	Metagenome / Metatranscriptome	137	N
F100395	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1092310	F100395	AGGAG	MAYYLFKTPNVEEGPAGGHRLFHFYKLNRGISIAKSGATYSQVRYPVDEDIADYDEFYRGGYTHTVDDTTRAALIAGGVGVTSANFTAL*
Ga0104988_109232	F001599	AGG	MSKKNSIALVWCDNGMVDGKFMQGVTDVMLKSGVEFATSLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNRDAEKRPLVTGVYFTTDNPEEPLMVPMPTVYSFVNDGDGGVGITRVHPLPENQLIKVDAAGMGFILMHRSIVPKVREAGPDGQVFMEIGRGTKFMGEDIFFFALCDKAEIPVYCHTGATVPHMKRFSLDEHYYKAFFGKPKEEPKSKLITPDKKIITPR*
Ga0104988_1092325	F010232	AGG	MRTREELLKIKEAFAYAMLDMLDVYDELLATGRVWVAPEPTVNDLLKNDEEANA*
Ga0104988_1092326	F010612	GAGG	MLEEDTPQWEHTVWIMAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGIKHSQEIVRVK*
Ga0104988_1092332	F015719	AGGAG	MYYSEIDGTEPTISIQVKDTKYTFTNESLTRLIEEKEVIKTELLQVERKFKSAQFDVREFFQSKYETDSDEIVVEVNDVNELLRQIGSEELTKSWSATVTITTTITGIEAPNKEAVEDMITDNIDVNFTADGDLWVDDITVDSVYPEA*
Ga0104988_1092334	F056346	AGGAG	MSSTEAPISINLKTAGGTQITLRAETADQFADMIAQGIHIITDAVTEVELAVKGTSASKPMSVADIASSFNANISSTESGGEETVEDKWGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWTGPKIPTELRTKPIFA*
Ga0104988_1092341	F008296	AGG	VTEAWVQEYDLLVSTLAIEYSRKYSIVETADIRQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSIISGSYEIPIKIKDLNFKPDKSGQVTDGNNWLVLRADIEKAYNKLAEAKQNILRLRFSVENCEWTELGKELNTSADGARMRVSRAINSLIRILGGWRTYTDTDNIEVKEEEDDTRA*
Ga0104988_1092342	F029029	AGAAG	MTQEPREIKDLFKKDYSRAMDLRGNSIGDICVCGSELFTAIVAFEYGEICFYFLDGECVDCGSLVTLPTPIDDHGMDCD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10923

Overview

Ecosystem & Geography

Associated Families

Sequences