NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10969

Scaffold Ga0104988_10969


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10969 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)51044
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (36.05%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F009669Metagenome / Metatranscriptome314Y
F010746Metagenome / Metatranscriptome299Y
F010817Metagenome / Metatranscriptome298Y
F010897Metagenome / Metatranscriptome297Y
F014486Metagenome / Metatranscriptome262Y
F016115Metagenome / Metatranscriptome249Y
F016772Metagenome / Metatranscriptome244Y
F020649Metagenome / Metatranscriptome222Y
F022820Metagenome / Metatranscriptome212Y
F028084Metagenome / Metatranscriptome192Y
F035200Metagenome / Metatranscriptome172Y
F037078Metagenome / Metatranscriptome168N
F080893Metagenome / Metatranscriptome114Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1096913F016115AGGAGLKILEESFTSKGFKLQQVKRDGDVAIYKKQLDDPESQNYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCNSIEDANKRFGELQEKLTNYNATSILPSGEKRGRGRPRKIA*
Ga0104988_1096914F010746N/AMTYHCAVSGEAIPPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGSLFDNEIVAEVEE*
Ga0104988_1096915F035200GGAGGMNVRYIVLRDGIRVSEDMHTDLKEAEAEADFWKKVIRAWPDGTKVVIKKIGSDRKA*
Ga0104988_1096921F007359N/AMRQIKLYKQNLGANWVIGIEGSKDKIIQFHNRVYNWGGTNGKLKWMSKDFAYFWITLDRLERVMFKYIMNGMTDKLGKKFRGAKGGLKEVVLNRVRNTINNIPVENFVRTEQVEPTYSLGQVSAEKLDSDS*
Ga0104988_1096924F022820N/AMKSENRISKILEKRILKDEDPKLISQIDKYLQNLELVFVKWAKAHPNWKESEE*
Ga0104988_1096930F014486N/AMKTIKDILSENEETFFPWTDSENPPLDANKNFVQWDKEIDEVFEGWRASM*
Ga0104988_1096942F037078AGGMKNQITITTQPFGNTTAFLLEGDKAQIENFHNAMYNYSATNGELHDMGNGKSFYFYAQPEAVLEAMVKVALYALCNKIKAKGMKGGLLNLAKRKARDKFDTFKEGRFLRTAEAGDTYNLGSITAEKPSDYCGAISAGRD*
Ga0104988_1096945F080893GGAGMKQNLKITDKNILEGEKANPQNCAIARAIKSKMKKKISNVSVLPSQVILEIDKKMFIAEMPKKGKDFIKRFDHGLAVNAFELNLKFKKGYALV*
Ga0104988_1096956F020649N/AMLNKIIKWWNDLAYYNKFFFLVFTPAMLFTLWGMSDLYINYFDELTKEDHMQFFLRIFFPISLGLFITALERKKRNKLIKDIKNYLDT*
Ga0104988_1096973F009669N/AMKNMLFKLFGPNWRSSSSGIITVIAVATAFAIHGDNSLVAFLPDKAEEYIIGISKLIAVVSGIVFALTVKDAAVTGGKVAQTKEAKKRVKKEIGHGENI*
Ga0104988_1096974F016772GGAGMNKLNLIAIALMGIFVIGCTTTNNGGDNQIGGTTAVENALPYIKPATILICTVVLEQALSVEDRKEKAKMINNVAAIVESLTIGSTPTPDQLQKALMDYLPAEKTHWAKYITAVKDIYAAQFAKLNGDAALAVKVLNAIAAGCKDATAEYVE*
Ga0104988_1096975F091423N/AVTEFVGALIRLVGGIFDAINNVFGAKNTKEMKERQVAQKEVDHQSKIEEAVKEKNIEELRKHIGT*
Ga0104988_1096976F010817N/ALALNFILVGCATVTPDKIQDDIASYDASTPDNYSKDNGGLIAVLDNGVVITSAAKERYNKLIEMYKIKFKKEKAIELAENSGITPYKDRHGNDLFLIDNEHLVYFGVMNSWLKEKVPADNIIDKTIDKINN*
Ga0104988_1096978F028084N/AMVKYIVLSLLFILTSCSDSSYQSRELPTKYPDTATMGSAADATEELKKK*
Ga0104988_109699F010897GAGMKLINTTKLCSTKLKEIVKWCLPQGLNLKDIGKIDFGNTRLGWHGRAWSGSMRAHIAVPEYKKYIKPYISGGFRGYLPVKTYSWEESLIELVAHEIRHIWQYKKRKFFHGIKKIRKYNMGTRAKLSEVDASLYAMRKVREYRKNNIKFGLI*
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