NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10976

Scaffold Ga0104988_10976


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10976 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)56354
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (72.41%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001143Metagenome / Metatranscriptome766Y
F002099Metagenome / Metatranscriptome593Y
F004432Metagenome / Metatranscriptome438Y
F016519Metagenome / Metatranscriptome246N
F041756Metagenome159N
F051078Metagenome / Metatranscriptome144N
F056333Metagenome137N
F066529Metagenome126Y
F079803Metagenome115Y
F085678Metagenome111Y
F101020Metagenome102N
F105044Metagenome100N
F105161Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1097618F101020GAGMNQVIKTTEGYMVLMSDETYACDAQGNNTWDTFNEAREVLNTLTITKQEQTARIFGQHYAYVHPYDNEKWDRKEIASTFYTPKSKVWYAFIRGMERHEQFPVIAKGAKADIRGVLKRLAESADKYIEDGKWIEALSKDIADAKYIMEHNL*
Ga0104988_1097623F105161AGGAGGMLSEVDIRDFDKQPVTPLYSVKPKSYVQCPRTEAVYYFDHVDGMYSYCLDMFGDVVHLVAWMDVIPLAKKPEVL*
Ga0104988_109763F105044AGGAMVLTTPEQINAYRLRVLRQGLKAEMRGMRLTAKGQTCYAILKGMGYKGTKQQVFDAVTIDSENLMFDSQIALAESANS*
Ga0104988_1097630F056333GGAMTELNREEIEAVVAEELEFLLRWESSLPEPTQDTELIKAAMRVLQEFKVIK*
Ga0104988_1097631F001143AGGMSAWLIAVVGIVYTVVAVDLLLKGNTGLGIAFVGYALGNVGLYMEAAK*
Ga0104988_1097632F041756GGAGGMKLHELEDLIMAAWMTREDIDSVLWVLLDREKKPDEDEVSNLLIGLHAMHDARMTKLFQGYDTVLKTNKVTYKGYGILKNPPTL*
Ga0104988_1097639F051078AGGAMDSSTSLKPNDIALILRPTIVDGVYQNNFQVLVSGFGPLTISEEAVNNLIGMATILASVIPHMEEDEKLADKLVEYCGKMFGDVGDFFYNADHDSFGDGNFTIDTKTIGGIQ*
Ga0104988_1097644F085678N/AMNVLLLKEHDDGSATYSFDMTFEERETLLSLGIMTAIKNGIKEGEKYVGDIDMGYTRCGEPDSLHGEGEQPRESEQS*
Ga0104988_1097649F016519N/ALNRAIKLSDMDGWSINMTQYLWQVKSGNEDLIVATSITLKDLMATKRFDKELHDTYDKFGRDVVKNYVSSFWNMEARDNPDRYGIDLHLYKDDLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQELPTHFFSINKDGTALFHCEAAAVLDSEVKESRNKYVYQGELFYKVPLDRLSHICL*
Ga0104988_1097659F004432N/AMVTKKTPVKIPAKVAPVKRRTPKPKTEQTINVSVAAPTPVAKTETKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITNQDKMPQLVKQEELIVPARSLLKDVDGLVLLVHKANLSTNSRTTVLALNADGSREKTMEGTVTSLFNASADRNAAMVAMLNNEILCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDMGKFAGYVAIGFKEKPEDIAALKTRINLAATDMSEE*
Ga0104988_1097660F066529GGAMIDKIKWFPIIDATGYPQKTDGTQRRIEKHQEEHRAIVKAAKAEEKLDDLLFELYCKKAEQQEIRLEMFTNRKLDIYV*
Ga0104988_1097661F002099N/AMKWVVAALLIVSLLVSAAEDKCSVRQFYGFAYGIHDPTERHNKMSEWLIRHEGLCKSSDMVVIWNNLSEWAGSADSHILRALVIHNYKEALVREKK*
Ga0104988_1097662F079803N/AMTEEVTHEQIYERLCAVEAKVDSLDKNTQVVVAAFTAAAGAFIVLEWIAKAVKPLIIIGAFFGAIWLAIDNKLHQ*
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