Basic Information | |
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Taxon OID | 3300007735 Open in IMG/M |
Scaffold ID | Ga0104988_10982 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 58210 |
Total Scaffold Genes | 78 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (82.05%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002766 | Metagenome / Metatranscriptome | 531 | Y |
F003540 | Metagenome | 480 | Y |
F064663 | Metagenome / Metatranscriptome | 128 | Y |
F104781 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104988_1098247 | F064663 | N/A | MNIKLMKLPPRKKLWGWDYNKNRELQMTGKEWHEYARRPELKTERGGDSAFGGGVEVWLDGKNVNRR* |
Ga0104988_1098259 | F002766 | GGA | MLDFAESVLKEIRKLRQSSEEMVLHGAIQDMERYRFVMGRLEALKLVEESVKELLKRRTEDQF* |
Ga0104988_109827 | F003540 | N/A | MEKVVDMLFPVLLAAVGWLLSEITSFQNRLIAIESKMPILITTDGVPTDSPISAARRQDMKDDIMADIHDLQVRVKLMEERGK* |
Ga0104988_1098271 | F104781 | AGG | MGAAVRGGGAVGSGPRNKMVSEPSMKTGKVVMASKGGAINQHKEMAMGMMGGGMMSRGYKKGGMAKKKVKKMRYGGSSCG* |
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