NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105547_1040685

Scaffold Ga0105547_1040685


Overview

Basic Information
Taxon OID3300007750 Open in IMG/M
Scaffold IDGa0105547_1040685 Open in IMG/M
Source Dataset NameMarine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', st44is 200bp-25jan2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Sponge (Stylissa Sp.) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina (low pH), Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028658Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0105547_10406851F028658N/AMAYDLKSVFYLDTEVTITAATAGAGSGQLDLSAYIDPIARGRTKGTGLAIYKAHFVTSQSGNSEPIDDAEAGSFRAGLVAGLGVGDNATGAATTGSSIFRATNNLLVASYDFYGPKSMIANASAVPTMYNDIIKPSTEVPYVIVRDNVCLVYDVGDNMTSDTNLSVRLECAQVTLDQATL
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