NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105015_1015484

Scaffold Ga0105015_1015484


Overview

Basic Information
Taxon OID3300007770 Open in IMG/M
Scaffold IDGa0105015_1015484 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4524
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.0Long. (o)-64.66Alt. (m)Depth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002195Metagenome / Metatranscriptome584Y

Sequences

Protein IDFamilyRBSSequence
Ga0105015_10154849F002195N/AMGDIAVMTMILELTDCDKKLIQMEKLALLHCTDECTKKSFIEFNNDALQQKISKMQSTLSHELMHDTFKDLFEGIESLESTVFLETASQISPIINKTNFSNPPVPGTKVPGNPCKDPFKGAPSAADKRAAECTIKKSPQCYKL*
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