NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0105700_1287978

Scaffold Ga0105700_1287978


Overview

Basic Information
Taxon OID3300007771 Open in IMG/M
Scaffold IDGa0105700_1287978 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA CLC_assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameMarker33 Vent, Axial Seamount, northeast Pacific Ocean
CoordinatesLat. (o)45.93316Long. (o)-129.9822Alt. (m)Depth (m)1518
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072515Metagenome121Y
F092719Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0105700_12879781F072515N/AAYKLAYPKAQSDGYVKKRIDKLLKTEKIQKMVKEEIREILDDEGVTNNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTEEKRSEQVTVWAGFKPEQLAEVEKHGKPELVAHAEREE*
Ga0105700_12879782F092719N/AMQNEKNSNEDIVLEDPCPVCKEELYNNNEYTQRIGLKDDLDKVIGWIGPHCKTEYDNDTKIVRFLGAGDIGGEA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.