Scaffold Ga0105700_1326546

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105700_1326546

Scaffold Ga0105700_1326546

Overview

Basic Information
Taxon OID	3300007771 Open in IMG/M
Scaffold ID	Ga0105700_1326546 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA CLC_assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	767
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Marker33 Vent, Axial Seamount, northeast Pacific Ocean
Coordinates	Lat. (^o)	45.93316	Long. (^o)	-129.9822	Alt. (m)		Depth (m)	1518
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092360	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105700_13265462	F092360	N/A	LRTGKVHEIDWHHIQMTNRNDYLGFIQGVGYEGDREADTRFGAFCDGAANAYVFEGNWAGTWVSNTALSHSDLQGDTSETKASQPFRVNGFAMDPLGWATKNNKDATNTWIWSPSHHPDRLEDTSENKKDPYPNITSGAADSNYLKA*

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