NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105679_10390507

Scaffold Ga0105679_10390507


Overview

Basic Information
Taxon OID3300007790 Open in IMG/M
Scaffold IDGa0105679_10390507 Open in IMG/M
Source Dataset NameMicrobial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Zebra Blood And Desert Soils. Microbial Community Dynamics Using Metagenomics And Cultivation

Source Dataset Sampling Location
Location NameEtosha National Park, Namibia
CoordinatesLat. (o)-19.03133Long. (o)15.54865Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016872Metagenome / Metatranscriptome244Y
F036979Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0105679_103905072F016872GAGMPQALRRGHGDPGGEEYSEGRRSMQDDQTAQDARRLLVAFSTNHPGSRMVSTEAGTVGPFAMYRPFVPSWADAEQAGLDRVRRDNAMKWLVEKGKLERDEEAENRLGTEEGFPDYDFGSAFRISDSGRELLEEIRRKGGRQ*
Ga0105679_103905073F036979GGAGGLEDRRSMHNDESAQDAARLLVAFRTNHEEAKMVSDVEMDRPFAPNWADAEQAGLDRVRRDNAMRWLVENKMLE
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