NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105779_100755

Scaffold Ga0105779_100755


Overview

Basic Information
Taxon OID3300007800 Open in IMG/M
Scaffold IDGa0105779_100755 Open in IMG/M
Source Dataset NameHuman hard palate microbial communities from NIH, USA - visit 2, subject 765560005 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11697
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Hard Palate → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F051214Metagenome144N
F067847Metagenome125N
F071329Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0105779_10075512F018385GGAGMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVDVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTVYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0105779_10075514F071329AGGMRPLYSKGLLMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0105779_10075515F051214AGGAGMPGKIVANDTHLRIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWLA*
Ga0105779_1007555F067847AGGAMFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEQIKKAELDSL*
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