NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105109_1001334

Scaffold Ga0105109_1001334


Overview

Basic Information
Taxon OID3300007812 Open in IMG/M
Scaffold IDGa0105109_1001334 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3660
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065947Metagenome127Y
F099550Metagenome / Metatranscriptome103Y
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0105109_10013343F101506N/AMSEDIVARTKISGIEQRIRSLEEQINDIRTTQLRQLERQNYVLALLAISLITTIVNLIVLLVK*
Ga0105109_10013346F099550GAGMFTLTEEEKKLLASKRKNMQIVWVPLSVLDEIAQIAEKLHLALNQTIIVLTIRALRSNTPQQPNNGSARFLCPICLQEFTDPHVFLTHLTGDEEVDVKPHI*
Ga0105109_10013347F065947AGAAGMLNRTFSLSKIFVGLKRKRNNELPCVAYGTGNLSRRIGRGYFFYDYDTQSAQEVERFRKYVQHTFYVAYVLFRTKHGVMVMTTLTFPYEQLRKYYDQFQQAFPSDYLWDIPLFLRISEKWDWQTGKVVSPMPAVIDNPKKIDIYKLIREDMYPKKWYRTSD*
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