NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105109_1001933

Scaffold Ga0105109_1001933


Overview

Basic Information
Taxon OID3300007812 Open in IMG/M
Scaffold IDGa0105109_1001933 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2777
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013613Metagenome / Metatranscriptome269Y
F023054Metagenome / Metatranscriptome211Y
F077496Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0105109_10019335F023054AGGGGGMEETNELRAQALIDSVVLLLSRYGCITDGEAEGLLDWALEEGILTAKGLRNLILGLEDRALSCDKKDVALAAVKMLREAWKELNGSMG*
Ga0105109_10019337F077496GGTGGLSAPQEEVGARLGRRKKWQDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVGLILKGLEAEKETEANVDAKAEEVP*
Ga0105109_10019338F013613GGAGGMPRPRKYPDGGVVISTYVPYELYEKVRELARSKGKNISEVAYELIKRGLEANGASAADPPDPPEDALHVALKGLEPLERERILQFMKRLEDAEAKLAKLGPNVRQQARTRHLTLLDMVNQQEVENLKGTVINLRHTYEKKIKRLVRDPTT
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Institute for Fundamental Biomedical Research
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