NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105118_1002759

Scaffold Ga0105118_1002759


Overview

Basic Information
Taxon OID3300007815 Open in IMG/M
Scaffold IDGa0105118_1002759 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1015
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069055Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0105118_10027591F069055N/AACLYNATTDRDIRNGSNAVVINAMQVRICYFHPATYVLAFGSDPISFASGVGTIGHCRPQFTTYPDGVPKIIYNDFAFDQSLKTVMEYIDPQVLRPEHHKKIYITEDNFPNPLFFSTFGRKKLFARLYLSIGFGQSPQNDPQNASVFQIAEYNGNYDADGFTAGLGSSLDANDVGTLVVGTQEPTVSLVGVSPSAPIVLKQVEFSAEDLPAYVGILIRSQNPNIIFPYGVIVLE*
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