Scaffold Ga0105112_1006945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105112_1006945

Scaffold Ga0105112_1006945

Overview

Basic Information
Taxon OID	3300007816 Open in IMG/M
Scaffold ID	Ga0105112_1006945 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	780
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045199	Metagenome / Metatranscriptome	153	Y
F052043	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105112_10069451	F045199	GGA	MSSLLIKYDISDFIQKWESYMDDLLNQIEQQRKKNKNVQELIEIYKKMNFIDSKML
Ga0105112_10069453	F052043	AGGAG	MKMLENSYQRLKEIISELDCIFKKGKLALVKANGYDYVVSGYHVSRNFIMFYFGKDFLDAYHYSDIQEIKELM*

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