NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104323_131873

Scaffold Ga0104323_131873


Overview

Basic Information
Taxon OID3300007821 Open in IMG/M
Scaffold IDGa0104323_131873 Open in IMG/M
Source Dataset NamePermafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPrinceton University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6153
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location
Location Namesvalbard,norway
CoordinatesLat. (o)78.11096Long. (o)15.55294Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016299Metagenome / Metatranscriptome248Y
F024070Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0104323_1318731F024070N/ARPEAAGIRVKLDRKTPATVPGAAGKTDFFCVGEAAAMTAMRAAGWDVVELHDGYYEDGLGGGVGIWGQGKYWEIRDTPFTVKEAAGSTGQAAADTTGGDIVNVRRAIFGV*
Ga0104323_1318735F016299GAGVPGHILKGPIPVTKQDPYPIGQRLFIHDERLTGLIVHNLHRRIVARKAAARA*

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