NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105736_1042584

Scaffold Ga0105736_1042584


Overview

Basic Information
Taxon OID3300007861 Open in IMG/M
Scaffold IDGa0105736_1042584 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.234Long. (o)-123.9163Alt. (m)Depth (m)9.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034103Metagenome / Metatranscriptome175N
F091352Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0105736_10425841F034103N/AKDYVKDVDGNVNVRLAYAYDTPPSRVDKGDRPFFLTSTTTLVTEKVDILHHAQASLEGKSLALKRDIQVSDGLRSYFAKITDLMHRNLLSWYEDDYVIAKDMVDNAAILENDQGRSGLCSCTCSPTFTSFMELNEYESLLSSLSIQGEVPVAPQAFDMSRNSEEASAFASIQ*
Ga0105736_10425842F091352AGAAGMTELQLQAIVNQQGIEGSGESNLDMTVVNGVSVSKWHLDSMTYGKEVPDTFKESVKKYLQQFVGSERVFPTQNGAPRIMTEFINKPYRF
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