Scaffold Ga0105744_1035868

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105744_1035868

Scaffold Ga0105744_1035868

Overview

Basic Information
Taxon OID	3300007863 Open in IMG/M
Scaffold ID	Ga0105744_1035868 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1232
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2335	Long. (^o)	-123.9142	Alt. (m)		Depth (m)	15.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074736	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105744_10358682	F074736	AGGTGG	MSRTVMFDKVMRGGSFTYTAAGTTWSSDGPWEYIDSNVLYSQEEIDIGGMTTTQEETFYPEAATVQNSPFYTVPGVVQRDPGDPSAGYVPYGALFEYVLITESPFKVDKWVSDQTYPGDGTSWIPVYSCPGINPRRTTDQATTLGFDNILYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFVVIQPLGGQTIPNGSGIQLPHMRVVLVGSGKEENDLSYIMRLRNSYLLQQDVN*

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