NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105749_1012619

Scaffold Ga0105749_1012619


Overview

Basic Information
Taxon OID3300007864 Open in IMG/M
Scaffold IDGa0105749_1012619 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1439
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.235Long. (o)-123.9123Alt. (m)Depth (m)10.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F005266Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0105749_10126191F000681N/AMNYNKGVENMYKRDQHYNEKISTENLYKELDTHYNGETDLVRNLMSISITEGLVETRHELGCANEELWSLNDFPEHEGFGSSDRAEYIRRITETIAFERKFLQAETELVTINRLEQSPKNDDVRSYMKMNDKIAEGMAS*
Ga0105749_10126194F005266AGAAGGMSVHIRYRFLKEKGDYLKDEHMTRGYTLVEALIEHPFHVVLKEFYKDFKGRGVQIFNIWRTPAGEANYRME
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