Scaffold Ga0111544_1004818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111544_1004818

Scaffold Ga0111544_1004818

Overview

Basic Information
Taxon OID	3300007917 Open in IMG/M
Scaffold ID	Ga0111544_1004818 Open in IMG/M
Source Dataset Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Liverpool
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2326
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location
Location Name	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F106103	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111544_10048183	F106103	AGGA	MEQEIMHFWHDIDDKIQDLIQLIRSRHTRFNGTPVEKVIVRLVDAYRASGQVADAIDKGWLK*

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