Scaffold Ga0105740_1015098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0105740_1015098

Scaffold Ga0105740_1015098

Overview

Basic Information
Taxon OID	3300007955 Open in IMG/M
Scaffold ID	Ga0105740_1015098 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1027
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9163	Alt. (m)		Depth (m)	9.6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010543	Metagenome / Metatranscriptome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105740_10150981	F010543	N/A	MKFAVAALLGCVSAISLKNEKKDSDDCPTSQQVFSYNEKVGTATGFLQLSACSASGISGAGLTCIPDHQLFATGMNGDEDLGQDIIMKGKPFHYNQKSQALFATGMNGDEDLGQDIIMKGKPFHYNQAPANATLFATGMNGDEDLGQDIIMKGKPFHYNQAPANATLFATGMNGDEDLGQDIIMKGKPFHYNQQKSQALFATGMNGDEDLGQDIIMKGKPFHYNQQPQALFATGMNGDEDLGQDIIMKGKPFHYNQAPANSKLFATGMNGDEDLGQDIIMKGKPFHYNQN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.