Scaffold Ga0105740_1075867

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105740_1075867

Scaffold Ga0105740_1075867

Overview

Basic Information
Taxon OID	3300007955 Open in IMG/M
Scaffold ID	Ga0105740_1075867 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9163	Alt. (m)		Depth (m)	9.6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018862	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105740_10758671	F018862	N/A	RAIVCIICDRFIIGTETIHKLTKEDIGAHSGRLGVKSYEEFYQTTLKDEVKRQYRVQGLQDMLLSPRSRKYPDGYATCSICYSAMQPQMACKKTPPKFAIANGFVIGSFPREIKFFNKDGQRLTRKVEDDEITDTLKAMVAPLRPYGCVFAYSGGAQKSLRGNYQFFEMDQNRLGGVMNHLNQAGIGE

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