NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102907_1092790

Scaffold Ga0102907_1092790


Overview

Basic Information
Taxon OID3300007962 Open in IMG/M
Scaffold IDGa0102907_1092790 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1556B-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)791
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2022Long. (o)-123.941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008525Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0102907_10927903F008525GGAMLTFKESFNEVIEAKLKLPKGEKVAKELTKLGRKKKTTAVITTKFNLYIDGIKMDNYKSMGAAERSLKDFINLMGA*
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