NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110931_1203210

Scaffold Ga0110931_1203210


Overview

Basic Information
Taxon OID3300007963 Open in IMG/M
Scaffold IDGa0110931_1203210 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F106100Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0110931_12032101F106100N/AHELGGHMDMITVLIPGGFKPPHVGHYKFFMHYINNPEVSEVRIFCGERQRKVGDDFAVSIEQAEAVLRLYGILDNPKVIYQRASVRKGSKGHYTNPFADVYDWAEENHDKTENEISLGVSSKDAGYQAGFLGYFKSFANIVEIQHAYEQEDFVSATEFREALAAGKPIDKFIPDHVNEEEIKKIFS*

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