NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105745_1024774

Scaffold Ga0105745_1024774


Overview

Basic Information
Taxon OID3300007972 Open in IMG/M
Scaffold IDGa0105745_1024774 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1533
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2357Long. (o)-123.9153Alt. (m)Depth (m)1.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F002207Metagenome / Metatranscriptome583Y
F045058Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0105745_10247741F002207AGGAMPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQENHGMGDINANGFPTKIKEVTYSNPVFSFFNIHSYKDEGITDEEYACQPDRGGIDMNDPDWFPKSVAFAKTQKDWYSWNN
Ga0105745_10247742F000450AGGCGGMGDRANFGFVQPNGHTIVLYGHWAGHNMLANLAEAVFKARPRWNDPSYATRIAISQMVADDWNSETGWGLSVNLINDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMSNEPIFTMDLSNFVEKYADVIVAV*
Ga0105745_10247745F045058N/APTAMSPLTFNVGTGNIEKVSRIRDKHNLKETYVSQYEPTGYRC*
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