Scaffold Ga0105746_1053514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105746_1053514

Scaffold Ga0105746_1053514

Overview

Basic Information
Taxon OID	3300007973 Open in IMG/M
Scaffold ID	Ga0105746_1053514 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1272
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)		Depth (m)	1.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073455	Metagenome / Metatranscriptome	120	Y
F097191	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10535141	F097191	N/A	MADLYPPWTIDSLDNLKASLDDLTLTLDSPLYITSVTRWDGAGSVTA
Ga0105746_10535144	F073455	N/A	DDLNKKGIMRGFHVVDQARFKEWLNHPDNRAFRTRPGRV*

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