Scaffold Ga0111424_101757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111424_101757

Scaffold Ga0111424_101757

Overview

Basic Information
Taxon OID	3300007978 Open in IMG/M
Scaffold ID	Ga0111424_101757 Open in IMG/M
Source Dataset Name	Human throat microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7510
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078842	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111424_1017574	F078842	N/A	MIISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLGDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDAALRAASECGIEMNRNIAEVDRSELSKKLREVQISPWRKQIDMAYRKAHNESSVNTLFHTSYVKYSKESDDLFREYVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSVRIRQMVNSIELDIYEVNS*

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