NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102924_1000011

Scaffold Ga0102924_1000011


Overview

Basic Information
Taxon OID3300007982 Open in IMG/M
Scaffold IDGa0102924_1000011 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)238529
Total Scaffold Genes207 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (66.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000159Metagenome / Metatranscriptome1863Y
F000168Metagenome / Metatranscriptome1799Y
F001069Metagenome / Metatranscriptome787Y
F008313Metagenome / Metatranscriptome335Y
F015365Metagenome / Metatranscriptome255Y
F015894Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0102924_100001112F000168AGAAGMVPGMAGEKQIMTDAPAKLVQRLTEGLQRERIVPRFVDSYVVEHGRHALQVHASLYRDLLELLQREALLAMTGRALDIIYSEPLPSGRTKPQPMLRKDAAAFRRKFLAALTRQQKWSAGDALDFQTDLQMYEDLLARNSSARRSRKPFEAANHPFVDRCAFLLDSSFLEKARIAASRALNDLENLAAQITGAVLHGQETAPARLKR*
Ga0102924_1000011124F015365N/AMRARSLILAAGLLPALATTSVAQDSATPPPPRTEAEKTALLDRVVANEKKSDEAMNLYERVERVETRKKAGDPPSFEIRVSRVVPAGTGVDHIPIGPDGKPADPDAYHEELLKLERALSWASDDGHAQQDAYEKIARKQKERDEIIDATRTAFLYTFISTETRAGRVLYKYSMAPNPAYKPTSRTTAVLAKVHGFVWIDPVAGQIARVEGEITEDISIGLVLAKVYKGSRFLQERYEIQPGVWMPSFSQYDFDGRKFFSTISIHERTFYTQFHRIGPPKEALAEIRAELGKPGAAVSDP*
Ga0102924_1000011132F001069GGAGMQYLPGFTVQCINPLCEARGHWLRADATGPISDDGRCPCCGDFLRNVPPPLSPRFRMRPRPLTARPPLRPRPR*
Ga0102924_1000011170F008313N/AMIWLTTANQPLSEALHAATGVEAENIGPNDFGALLGLCDELSPRIKKTTPWLREVRGYYSIVAKLENACHSIQPAVAAWAASEMKTCSRYVAVVLDQNLSLELDTRAAVRSI*
Ga0102924_1000011200F000159AGGAMKFNSILRSAALVAALACTLPLLAKPITKTINITRSAKIGKADLQAGEYRLMIDGNKATVQRGNQVLAESEGRWEDRATKSSNDSVLIGENGQVKEVRFSGKARVFVFSE*
Ga0102924_100001174F015894N/AMWMMIALFVGLGLLLAGGLFVAGRVVRSLGLSAARAKDTVRTPEGTFRLQKEAEVGPGLPVYPRASLVVPDDDAAAAAIKQAQNGIETSIYHTTDLRDYVDTWYTGHLSPEFTRHSPGDKSGPTILSDAHVSDEDITFVAERDQMVRVVSLSPDSGGTRISLIRFNKSSPAADASPTPVQPAPAQQDPAQ*
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