Scaffold Ga0102924

Basic Information
Taxon OID	3300007982 Open in IMG/M
Scaffold ID	Ga0102924_1000341 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58337
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (76.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

58337

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (76.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005890	Metagenome / Metatranscriptome	387	Y
F007429	Metagenome / Metatranscriptome	351	Y
F018797	Metagenome / Metatranscriptome	233	Y
F051804	Metagenome / Metatranscriptome	143	Y
F069867	Metagenome	123	Y
F102903	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_100034116	F051804	N/A	MRYNRAMAKQVVATTLMIEILGPKDASAKRIRFVEDILRNCIKTLDKDFRKSRIPQMKGFSLRPEKDLRKRRGL*
Ga0102924_100034117	F069867	AGGAG	MSQRIYEYPKVIGKTVAKLTVANESDWHNISVKFTDNTAIHFSIRPFMQFEPEHIDWTTGNGKILRSYPFVRQTEG*
Ga0102924_100034119	F102903	AGGA	MPKPWVELIGARGRTVKRMNVAYDEEYVAVEVEFEDGHSMNVDIIPAVQIRPQFQHVSTGDARIIRNYKSRISVAGGLKIRSR*
Ga0102924_100034145	F005890	GAGG	MSFLAANPADSPHLSPCTVEQANQSLQTRNGGGKLRPSYGGHASSNRIAIAVNFRSRADENFALARVCRYVSRLLLGHSFGTFPAPGGTRSSASHYAPLRGPGSSQNKFANHGKVRRANFFRAPPRKQTFGTWEPGPLAKLRPV*
Ga0102924_100034150	F018797	AGGAGG	MRIVALSLLVLWTLTLASCQSKAAKVKQLQDQYNAEYPA*
Ga0102924_10003418	F007429	N/A	MKKKQKPAKKSRPAIKPTAQNERLKGWNEIASFLGQPVAVAHRWARSGMPVTREGRFMCASREELSGYLGREAGLDVPVHIATENMDLSADLKLALAHARAGKHNKNKKAKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102924_1000341

Overview

Ecosystem & Geography

Associated Families

Sequences