NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102924_1135582

Scaffold Ga0102924_1135582


Overview

Basic Information
Taxon OID3300007982 Open in IMG/M
Scaffold IDGa0102924_1135582 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001323Metagenome / Metatranscriptome722Y
F028872Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0102924_11355822F028872AGGAMPPDRPRDVTGLTAAQLERARRDLEISLALAFPGSPVRVTIEAEMTAIDAELTSRAS*
Ga0102924_11355823F001323GAGGMPTAETARHAPEVNRPQHRLTQLTTYELRDYRRQLESAIAFFDGKDPVPPARDRLRAALAAVAAEQDDRARITHAS*

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