NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105748_10054620

Scaffold Ga0105748_10054620


Overview

Basic Information
Taxon OID3300007992 Open in IMG/M
Scaffold IDGa0105748_10054620 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.235Long. (o)-123.9123Alt. (m)Depth (m)10.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F082676Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0105748_100546201F082676AGGAMPNWVYNTLTIQGPKSEIDFIKDKLNQPFKVLHDSWNMKTNEMEVSESIYSAPVFAFWNIHSPLEDGITMEEYV
Ga0105748_100546202F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWNSETGWGLYVNEIGDNEHKIAIVDFNQQTFSLHEEAPRNDKDNKVSGMSNQPIFTMDLSNFVEKYADVVISV*
Ga0105748_100546205F000311N/ADRLSMEMAYWDAQIMGLDPQALSPLTFNIGTGSIEKVSRIRDKFNLKETYVSDYEPTGYTRR*
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