Scaffold Ga0105748_10172280

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105748_10172280

Scaffold Ga0105748_10172280

Overview

Basic Information
Taxon OID	3300007992 Open in IMG/M
Scaffold ID	Ga0105748_10172280 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	892
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.235	Long. (^o)	-123.9123	Alt. (m)		Depth (m)	10.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013594	Metagenome / Metatranscriptome	270	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105748_101722802	F013594	GGAG	MSTTYGDRPLRVTFTSSDSSGVAEFFDGSETGAIGITVPRFTTTERNAVSASTVKQGMIIFNETDGKMQVYTGSDASNTSSNWTDIGGGTILADADGNTNIEIGATTSDEIDVDIAGTKIATLDAVGINIEAGAIGVRHAGTITGTATIAAGENIGLFGEVTFTGTVTVEGEMVVV*

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