NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0113877_117809

Scaffold Ga0113877_117809


Overview

Basic Information
Taxon OID3300007993 Open in IMG/M
Scaffold IDGa0113877_117809 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus mitis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041827Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0113877_1178091F041827N/AMKHFLSVLALGCLLLSCNRDLENNENNETPAPQNEKLVLLDKLREGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHEDDYILYEYTDDKGNVIGTKEVEVPVTVVGSTPKPVVVFEGDKPTEAKDAVTPGQGGTVGEPTTLPDT

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