NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111052_101123

Scaffold Ga0111052_101123


Overview

Basic Information
Taxon OID3300007996 Open in IMG/M
Scaffold IDGa0111052_101123 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18258
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032313Metagenome180N
F072446Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0111052_1011231F072446N/AMKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFPFIVEQHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTLTSIGTSPVLCGVKSIEAVGIAENGNTYDLSAEMKLRIRDYSDKWKYRSSGIVTLNCENTESKTAKYVVPLGRIREEELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSMLQELPSKSVQQYYTPNGYEREATYFTALWPVHDKYNEREL*
Ga0111052_1011239F032313N/AMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPRIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK*

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