Scaffold Ga0075480_10012380

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075480_10012380

Scaffold Ga0075480_10012380

Overview

Basic Information
Taxon OID	3300008012 Open in IMG/M
Scaffold ID	Ga0075480_10012380 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5322
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025878	Metagenome	200	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075480_100123801	F025878	N/A	RTFRILLPGINGLSDGITWLQKQTEDVNEEWAAWNQTLDEGRRAAGNMYPEIDETAKSVEELMQEATEAAGAQLELAKSVNAVYDEVKQLNPELVEMLGLLDVQDDIEKLRAEFDKYNEVIAESSDNVRELQQAERDLTRAIIETLSAHGLLTLAFDKQLKIKIDTGDLDAAYASALRVLNAFQQVQQVSAGQRPSTYVPPRDELGFLSAPPVATTTITPISSITRAPSGAIQNVTVNVSTINPTQEVGEAVVTAIRNYNRTSGSAQFGVLRL*

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