NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099816_1065672

Scaffold Ga0099816_1065672


Overview

Basic Information
Taxon OID3300008015 Open in IMG/M
Scaffold IDGa0099816_1065672 Open in IMG/M
Source Dataset NameCoral microbial communities from Puerto Morelos, Mexico - Siderastrea C A metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameMexico:El Islote,Puerto Morelos
CoordinatesLat. (o)21.0853Long. (o)-87.0617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069684Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0099816_10656721F069684N/AELKALYKFYHKKYWLAKMTYKYYKKAELTCNIGSVLLVVTGTVVGGVTLNPVPLGTISGAGLLLKTYSEAKNYKRKIEMSKFAYTSYSKVLTDLRSFMRGLNYNEKEFLDYVKVIDDIIIDMCPLTDKFEKKYNKVFIQE*
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