Scaffold Ga0105158_1063315

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105158_1063315

Scaffold Ga0105158_1063315

Overview

Basic Information
Taxon OID	3300008019 Open in IMG/M
Scaffold ID	Ga0105158_1063315 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	814
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: California, Little Hot Creek
Coordinates	Lat. (^o)	37.6906	Long. (^o)	-118.8442	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025877	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105158_10633152	F025877	AGGAG	MPGLEEGVTVWRYRVQDPDRFDKFRVKDLGNGVKITLGRVKGTDRWEIQNYIFDKGRFKDKESVRKWLEKHLKSEAQLLLDFRAFNEMRRRFLRAFIEIARID*

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