NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098052_1005454

Scaffold Ga0098052_1005454


Overview

Basic Information
Taxon OID3300008050 Open in IMG/M
Scaffold IDGa0098052_1005454 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7165
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014794Metagenome / Metatranscriptome260Y
F018622Metagenome234Y
F018815Metagenome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0098052_10054547F014794N/AMAVASIDNLAPTKSLIDLTQKDKGDFGLEDYDLNFIFDDILLVEYVDETDQGDEVIRNGIIVPTNALTKAWRKGKIILAGPETKYAKEGDIVIFPNNMGVSISNINVTGKGKVEKGIFLNEERMFGICKRRNDSTTSNT*
Ga0098052_10054548F018622GAGMIVQRATLDSLLLNNVCDIRFARRIVKPGQAPTRRMLCTKSLSLLNSINGRISLNYFTPKGPQHSYLGPDNLAVAWDIIMQDYRNINMNQCDLISEIPANEEFWMYFNESIYPMSANQKLNFMNS*
Ga0098052_10054549F018815N/AMNVNLEKVTNLLKPFLLRDIIVKTDKKILKRGKLKIFQIKQYHINLTLEYNDAVKSYEIPYPFRVDRHDHGAILNYQLSSFIPKKQICKVKFLDSSSKSKLYDNLVYMLTSADF*
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