Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_10099031 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21741
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (33.80%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

21741

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (33.80%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F037191	Metagenome / Metatranscriptome	168	Y
F048940	Metagenome / Metatranscriptome	147	Y
F053990	Metagenome / Metatranscriptome	140	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F081258	Metagenome / Metatranscriptome	114	Y
F091925	Metagenome / Metatranscriptome	107	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1009903123	F053990	N/A	MMYSSSQGGFKMIDTCILHDDYEDFAKKFLGVDYEDYISLQMGLPDEDEIEIEYPVGI*
Ga0108970_1009903125	F093764	N/A	MARRCNSASRQMVENLQSQLVDYFQENILEDCDYEDLTGSDLLDALVGTFRELESEIQKKLNPLQFVLNKLDPKDSDSQVLNG*
Ga0108970_1009903135	F013631	AGGAG	MILDVFHYTTSRWDWHDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDSSMVMSEPRCYADTLDWVRKWCNSFCILPEYC*
Ga0108970_1009903136	F081258	N/A	MTITFPRLSAGIYEVQKDSNTVGFIRKATASKWIVADVVDTPQHVSKTLKDAKDACINLIIFDSVDSNPSDDYNDSVEVDKINSALNKTLEGSLHCYKQVPGTDKFEEVCPSEFGFAEPTLEPIEF*
Ga0108970_1009903137	F031454	AGG	MHESTLDLFCNDNSDEFADEYAMEIERKAAELEVTVDYYLAEFI*
Ga0108970_1009903141	F061794	N/A	MPFSKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVDKGRNLLKKYISNLS*
Ga0108970_1009903144	F027828	N/A	MLTGFKSVKMTELTTETMLDTVLTIEEILTEKQLTALRDIMYFYKEFELELYNYPPEDTLFTKTQRELFDIFDIK*
Ga0108970_1009903146	F091925	N/A	MTSISFTSGELLDIISALEEKENLAYLVDYDPGLAAYYMNLGNQFQKVYDKLQDFVPENRVANLVLAVN*
Ga0108970_1009903161	F037191	N/A	MTVAEWIEKLKQFPQDQEVKITDGHNYQFYEGDFDFQLFEDVDGSTFVDIGIGGFDEEDND*
Ga0108970_1009903164	F058096	GAG	MNAQLSIDECKVMWVVGALERLATLGLIGPDIPLQLTGSALDDYLQIDEHRELLFESDFEIASIFTAIVNDESKNTDPDEIKPLIELLLEYKNNRTEIVKYALSHQSI*
Ga0108970_1009903166	F015080	N/A	MFDQLEFQAHPIPGAIQARYKFSNDWSISVVSGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMRVLVQL*
Ga0108970_1009903169	F048940	N/A	MEKQFFINFISLINEVQGKSKLPSQIQSNRKSAWCKKVSNPRQKKDALTRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_10099031

Overview

Ecosystem & Geography

Associated Families

Sequences