NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0108970_10385715

Scaffold Ga0108970_10385715


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10385715 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14239
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (64.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020680Metagenome / Metatranscriptome222Y
F023832Metagenome / Metatranscriptome208Y
F026862Metagenome / Metatranscriptome196Y
F032635Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0108970_1038571512F032635N/AMKRQWRLADKNNHYYHQSYNGLIVGHAYNVVHTIVWGAKIPINAAEELILGQYVELEYAKRAIEEYWDEKDRTLEVPHEYLLSKS*
Ga0108970_1038571514F023832GAGGMANPTRKMIEVYEMLKDGKPFKFDTLVSRLGCKPVTAMVLICALKRDCNADIETIRDGRKVESYQLHNAAAIASKMVGKAKSIKAPKAAKVAVLKTKTAVGRKPKAAAVDDGSVPTVEVEEVGFDELASLKAELGLGESYSE*
Ga0108970_1038571515F020680GAGGMTTANPLVLASVSDIKTLVSTGVVKHADAIVRVDLVLARKSLTDGKKARWTRLREWLVREQAQTEAVVA*
Ga0108970_1038571536F026862GGAGMANHVNTHVRFEKLSDAGKAKLQELYSRVRTGDGYEWYSDIFGIDRETSSLYEWNLQNVGPKWCYFEDRGEDYFNTVSAWSFPQAGLEWLFEQIASVDPDFIASIMYEDEMPNFFGVYVYNKDGMIDGCEWGEEGEIEEMMHEMVPSLRELDQEEQSEVYFDIWSDNIWELVHDKQDQVYNDIMNTLN*
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