NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0108970_10540874

Scaffold Ga0108970_10540874


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10540874 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3193
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019061Metagenome / Metatranscriptome232Y
F049575Metagenome / Metatranscriptome146Y
F072267Metagenome / Metatranscriptome121Y
F072285Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0108970_105408742F019061GGAMTEPSDTEILEFLLNQFQSHSLKMNGESDWYFINSGFPMNHAKGKSARDAVIAAMRAK*
Ga0108970_105408744F072267GAGMTEKIGYKLNPVKLTGASQSILPFVCGAFYYTEDYEYFDIIKPYLDIPKKPKTLEEIQQECEEKFDKRIESIKHKFAELKCHQEYLYNQKFNRIIENFEYARKNGRFPPKLTGTLDYSKLIATGSDISTSFVIKEGGKEVGYYTFGNRKYFKYYMPEKPNFLIRFCMDKLLGFKWIDDK*
Ga0108970_105408746F049575N/AMKNTLCACDLMVIVDCLHRSLNVIGHSKWTKETRERTMEKVILIMEQMNAEVVCGNVEPIVVSGDVGG*
Ga0108970_105408747F072285GGAGMKYPQSVNKSILIREVYEDTYENPYDYIVDTMIWENRVDELHTIWCKGKDPHKEKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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