Scaffold Ga0108970_10556208

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0108970_10556208

Scaffold Ga0108970_10556208

Overview

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_10556208 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1077
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007970	Metagenome / Metatranscriptome	341	Y
F097192	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_105562082	F097192	GGA	MADERQPDDDAEDDREVVHFTMPGLSVRITDRTLQTIGQYTGKSWMAVVFAIAIAIILYAVNGFTKGGM*
Ga0108970_105562083	F007970	GGGGG	MSWQWFSAVGKLAIAMVGFSLALTLDADEPTPAAVADLATLSRRVTDLEQRVRDIQSRMPAQQTVSAPAAEDLPILEIHSETWCGPCQTLKADLAALGEAGVAVRWVRFSDRVPAMRWTGPDGKQVVQTGYTRGTIASLLDRVKAAHVARRGKNL*

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