Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_11519539 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0108970_11519539 Open in IMG/M

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5097
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

5097

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (82.35%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007468	Metagenome / Metatranscriptome	350	Y
F007470	Metagenome / Metatranscriptome	350	Y
F034924	Metagenome / Metatranscriptome	173	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1151953910	F001460	GAGG	MLGYTEEDLNRMINAVHDVKLFYLRSPSDLMNKDPLVKDLEDTVSFMQGLWAEGYFD*
Ga0108970_1151953913	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLANLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFDQQTFSLHEEAPRNDKDNKVNGMSNEAIFTMDLSNFVEKYADVTISV*
Ga0108970_1151953915	F007470	GGAG	MDYQDGFEDGVKFAREVIVSNIRLWAETSEDGQAYDDIADRLEFGTVDYDL*
Ga0108970_1151953917	F000714	N/A	GNEMETTETTVTTIPDTYNPNLLVTYKVIRGYSDAEYQTDKVTSIEWDLHNARQAQKRVGVFEDKVSRVKDIITEAYEDSDDQETLRAIAEALGIELVREVQFTATLEVSGTYTYNILENDYDLDLDSEVTDALYADSSNGNITIDDTEVCHVREA*
Ga0108970_115195392	F003603	AGGCGG	MKNKEQQIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRVIEVVAWIIEKQARRYEREVETGGTISEGLAIAYKLDEVIDKIKDKNTFKHVKLPITTAERKEIINKLPKVKETNYRYSWLHDTNNTNRVTIDHPFI*
Ga0108970_115195393	F000852	AGGA	MATKREYLKSKGITVGARGRFSAAAKQALQEATSNGVTFEAEKQAPKK*
Ga0108970_115195394	F034924	GAGG	LPIYRVFGTKYKNYYTIVSAADEYEAAEIANSRPSIDWDEVPTDDEIEATDVFLDEDTSIDLQLNM*
Ga0108970_115195395	F001019	AGGAGG	MSSYAPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDMPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMRELIADL*
Ga0108970_115195396	F000441	AGGAGG	MSDPYIDEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMSEQEGQNE*
Ga0108970_115195397	F001781	GGAG	MKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEDGAEQHQDDVLEWMMNRDYIVDPMWEEEEDEDE*
Ga0108970_115195398	F082666	AGG	MIETAEALPESIQRAVDLGISGIDIMHGERKIMMLVAEQELANAQAIEDETEEAMDSMERKYWEGQLDALVELYRLTYDISFAIGARDEARG*
Ga0108970_115195399	F007468	GGAGG	LTKSSRFLEYMKLHLISLNQDMEKDLNVESKINIQGQIMATEHLLSVATDIMNNSNERYNND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_11519539

Overview

Ecosystem & Geography

Associated Families

Sequences