Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_11643265 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16276
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (32.35%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

16276

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (32.35%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F008080	Metagenome / Metatranscriptome	339	Y
F008356	Metagenome / Metatranscriptome	334	Y
F009682	Metagenome / Metatranscriptome	314	Y
F014128	Metagenome / Metatranscriptome	265	Y
F028094	Metagenome / Metatranscriptome	192	N
F038674	Metagenome / Metatranscriptome	165	Y
F060851	Metagenome / Metatranscriptome	132	N
F065779	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1164326513	F014128	N/A	MEQLQKMGIQIGFLISGLFGAILMATKNAKTDTKSVMLSIVGGMSAANFLTPVLVDTLNIVNIKHQNGVAFIAGFLGLKLVELISEKFLEKVGQSSKTQTKRKKR*
Ga0108970_1164326514	F003904	AGCAG	MNNIILNIKKYLLVVLLPTAIFVIFALSSLKDIEKAFARFRFGRDITLYLRKSTDHLTYLGAAYTATGDKKFIEQFNTHLKEREKYFNNEVFISKILTQEELKEFRVGLDISNELAKEVETPAFEKMDSKAFFGEKYLDYKKKIYDSKDKFRTLINDSSERIIKEETQLLNIYLYSLCLIIIALVYLIKHENTPASKKKPIKKKKK*
Ga0108970_1164326516	F001732	N/A	MKRLLVIFMALLLSGCFSTIRPAKQIDDNQKIIAKEEKKVDNTLVEIEKNDKGKRIQTSGLSVGIQHSLNQVTNAPVQVDTARKLNERVISIVGSPHIDEIKRIKATVDLLNSALVEERKKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFFISALTAIIVFVVVFVLLRLLATVHPAAGAAFSIFNMLGSSVISIVKALTPKAFEMCNFATKDKLDEFRSPLVKIVDVIQELKEKQKESPDRVYPLNEILKRFDKEMDSTEKDLIDEILREQKWIK*
Ga0108970_1164326519	F060851	N/A	MKAILEFNLPEDQRSFEMANQAADMVAAIGHFEDRLRSYIKYGHEFKSANEALEAIRALLHEEINLRRINIHD*
Ga0108970_1164326520	F065779	N/A	MDSQPVSISINLKIKGQEITLSMEEARDLYSQLKGVLGYNNQPFVLPYPWGTPTPSINYTLNCSDNTNSNWKLP*
Ga0108970_1164326522	F008080	N/A	MLKIQIWMRGTMEYSRDTIPGPTPDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFERGGGSNYVPEAPDKVGEVNIWWSHDMKFNYVYFWNNFTEFDPSKLKIQYGVDQNGNKYLEDLIYDGEYPDDYNDFGDTGYGYNGPEFIYHPEQKFAEEEED*
Ga0108970_1164326523	F038674	AGAAG	MSMNRKGFFKTLFGGFVAASAAPSLVKAEDNPQPSKDLSLSREALRIDEHGNFGIGGSGHVGLGTSTPMSKLHVKGIIFHVNDRMLEMSGDENGDFKMQWLDPKQNETANTIVIHKPKDDPWKREFITIR*
Ga0108970_1164326533	F008356	N/A	MNISEFERTKPTETHKKIKQLEKLILSEQQKTELLYSNRVATLDKMLLAVRELMDSFKKGE*
Ga0108970_1164326534	F009682	N/A	MQKDLYIEEKPQKKAVVKNDDLIFDGKNIIIPSYYADIISEYLANVDLKTASFNEADHHDYLAFCSFFEAITDYK
Ga0108970_116432655	F028094	AGCAGG	MNQQLQFDFRSPEEIAKQRKISEENEKVLNDMFSNDDYVYNRYVDFLLDLIPFRWGWRAKNWPRAIKWWAKCKYQKIRYGVSDDDVYSLGYNIALFILPRLKYFKKKGKTGIPCCFLPDNFHLLKDEEQTAAEEKGVKEMNFAIDEMIFAFEYIIDGDKFCELPESLSFKAKGLNLNSEKTIEEKQAWGEYMEKANKLNDRKNNGLALFAKYYDTLWI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_11643265

Overview

Ecosystem & Geography

Associated Families

Sequences