Scaffold Ga0110935_1142842

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0110935_1142842

Scaffold Ga0110935_1142842

Overview

Basic Information
Taxon OID	3300008065 Open in IMG/M
Scaffold ID	Ga0110935_1142842 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from the domestic sewers in Singapore - Site 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	677
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Domestic Sewers

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.3	Long. (^o)	103.8	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024268	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110935_11428421	F024268	AGGAGG	MAIAELYTGTEAISTTEHSVTTDTSGPDADTTDGVFQAFLDVSDMIAGDQLQIRVYEKVRSGDTQRIVYQAILTGAQSEPIWVSPSLVLLHGWDVTCDALAGTITVNWSIRQVA*

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