NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110929_1004815

Scaffold Ga0110929_1004815


Overview

Basic Information
Taxon OID3300008072 Open in IMG/M
Scaffold IDGa0110929_1004815 Open in IMG/M
Source Dataset NameMicrobial Communities in Water bodies, Singapore - Site MA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2507
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023572Metagenome209Y
F044307Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0110929_10048152F023572AGAAGMGMPVKKGLYYNINKRRKMGLPAKRPGQRGYPTAEAFKRSARTAKR*
Ga0110929_10048158F044307N/AALEQAISQLLAEVMADPTATLTDKSKVLDRALKLEAIKQKADSDDWGAAFADDEEDEK*

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