NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110929_1130634

Scaffold Ga0110929_1130634


Overview

Basic Information
Taxon OID3300008072 Open in IMG/M
Scaffold IDGa0110929_1130634 Open in IMG/M
Source Dataset NameMicrobial Communities in Water bodies, Singapore - Site MA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)551
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064510Metagenome / Metatranscriptome128Y
F093522Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0110929_11306341F064510AGGVADIIIDIASEFTGKKAFKQAEDSTEKLMKNVKKLAKTLGIAYGSQQILAFGKASIKAAAADQKAQQQLALALKNVGLGRDAATSETYIQNLQSE
Ga0110929_11306342F093522N/ARRGFRSLARLINKSAAGAIYETMGRKTPNSRMVVNQNNKYGSQMKGDAKMEGRALFRAYDENNGKARDAVLKAIKGAADKLNARAKG*

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