Scaffold Ga0105975_100102

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105975_100102

Scaffold Ga0105975_100102

Overview

Basic Information
Taxon OID	3300008091 Open in IMG/M
Scaffold ID	Ga0105975_100102 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158256496 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	51898
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (86.30%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F103430	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105975_10010229	F103430	GAGG	MKQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMDTLNELKEVLDQEAIAYQIENDLQLI*
Ga0105975_10010249	F076191	AGGA	MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTDKAAERHIDENDHHYKNPTTCVRSAHDNRELKDVVHLLILAGGNEIPSNHYGVLRDA*

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